Stress: Plant Protein Database
PSPDB: Plant Stress Protein Database
Selecting "BLAST" allow users to paste/upload sequence(s) in FASTA format. Search allow users to compare their input sequence against sequences in the database for similarities.
Selecting "CLUSTALW" allow users to paste/upload their sequences in FASTA format. Analysis generates a multiple sequence alignment which is used to run Njplot to generate a phylogenetic tree
Selecting "HMMER" takes the user to another menu which has two options: 1) Build profile: Build profiles from the sequences either selected or entered and Build a sequence to generate a profile 2) Query profile: query a sequence using the profile generated in above step 1) or select a profile from the available Stress protein profiles to infer a family for a given input sequence